Welcome to EnTAP’s documentation!

EnTAP is an eukaryotic non-model annotation pipeline developed by Alexander Hart, Cynthia Webster, and Dr. Jill Wegrzyn of the Plant Computational Genomics Lab at the University of Connecticut with additional support from Dr. Stephen Ficklin and Josh Burns of Washington State University.

Latest version of EnTAP can be found at GitLab: https://gitlab.com/PlantGenomicsLab/EnTAP

How to cite: Hart AJ, Ginzburg S, Xu M, et al. EnTAP: Bringing faster and smarter functional annotation to non-model eukaryotic transcriptomes. Mol Ecol Resour. 2020;20:591–604. https://doi.org/10.1111/1755-0998.13106

Getting Started

• Introduction
• Installing EnTAP
• EnTAP Ini Files
• Configuration
• Configuration Flags
• Test Data

Running EnTAP

• Executing EnTAP
• Execution Flags
• Interpreting the Results
• Troubleshooting

Development

• Changelog

Note

Make sure you specify the version you are using in the bottom left before reading!