Frame Selection Flags

These are the flags specific to Frame Selection using either GeneMarkS-T or TransDecoder. These will be used via the command line (denoted CMD) or ini file (denoted INI).

General Flags

--frame-selection [integer] [INI]

  • Specify the frame selection software to use
      1. GeneMarkS-T
      1. TransDecoder (default)

--complete [INI]

  • Tell EnTAP to mark all of the transcripts as ‘complete’. This will only be seen in the final output and will not affect the run.

TransDecoder Specific Flags

--transdecoder-m [INI]

  • Specify the minimum protein length